#!/usr/bin/env Rscript library(data.table) library(parallel) cl <- makeCluster(10) mirrorType <- commandArgs(trailingOnly=TRUE)[1] packagesFile <- paste(mirrorType, 'packages.nix', sep='-') mirrorUrls <- list( bioc="http://bioconductor.statistik.tu-dortmund.de/packages/3.0/bioc", cran="http://cran.r-project.org" ) mirrorUrl <- paste(mirrorUrls[mirrorType], "/src/contrib/", sep="") readFormatted <- as.data.table(read.table(skip=6, sep='"', text=head(readLines(packagesFile), -1))) nixPrefetch <- function(name, version) { prevV <- readFormatted$V2 == name & readFormatted$V4 == version if (sum(prevV) == 1) as.character(readFormatted$V6[ prevV ]) else system(paste0("nix-prefetch-url --type sha256 ", mirrorUrl, name, "_", version, ".tar.gz"), intern=TRUE) } formatPackage <- function(name, version, sha256, depends, imports, linkingTo, knownPackages) { attr <- gsub(".", "_", name, fixed=TRUE) if (is.na(depends)) depends <- ""; depends <- unlist(strsplit(depends, split="[ \t\n]*,[ \t\n]*", fixed=FALSE)) depends <- c(depends, unlist(strsplit(imports, split="[ \t\n]*,[ \t\n]*", fixed=FALSE))) depends <- c(depends, unlist(strsplit(linkingTo, split="[ \t\n]*,[ \t\n]*", fixed=FALSE))) depends <- sapply(depends, gsub, pattern="([^ \t\n(]+).*", replacement="\\1") depends <- depends[depends %in% knownPackages] depends <- sapply(depends, gsub, pattern=".", replacement="_", fixed=TRUE) depends <- paste(depends, collapse=" ") paste0(attr, " = derive { name=\"", name, "\"; version=\"", version, "\"; sha256=\"", sha256, "\"; depends=[", depends, "]; };") } clusterExport(cl, c("nixPrefetch","readFormatted", "mirrorUrl")) pkgs <- as.data.table(available.packages(mirrorUrl, filters=c("R_version", "OS_type", "duplicates"))) pkgs <- pkgs[order(Package)] pkgs$sha256 <- parApply(cl, pkgs, 1, function(p) nixPrefetch(p[1], p[2])) knownPackages <- unique(pkgs$Package) nix <- apply(pkgs, 1, function(p) formatPackage(p[1], p[2], p[18], p[4], p[5], p[6], knownPackages)) cat("# This file is generated from generate-r-packages.R. DO NOT EDIT.\n") cat("# Execute the following command to update the file.\n") cat("#\n") cat(paste("# Rscript generate-r-packages.R", mirrorType, ">", packagesFile)) cat("\n\n") cat("{ self, derive }: with self; {\n") cat(paste(nix, collapse="\n"), "\n") cat("}\n") stopCluster(cl)