{stdenv, fetchurl, cpio}: # Note: you may want the older C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz stdenv.mkDerivation rec { name = "ncbi_tools"; ncbi_version="Dec_31_2008"; src = fetchurl { url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz"; sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr"; }; configureFlags = "--without-debug --with-bin-release --with-dll --without-static"; # PIC flag (position independent code for shared libraries) NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else ""; buildInputs = [cpio]; meta = { description = ''NCBI Bioinformatics toolbox (incl. BLAST)''; longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support''; homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; license = "GPL"; priority = "5"; # zlib.so gives a conflict with zlib }; }