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282 commits

Author SHA1 Message Date
Eelco Dolstra eeed10ba8e * g77 -> gfortran throughout. Got rid of the separate 
expressions/builders for Fortran.  Tested by building Octave with
  gfortran 4.3.

svn path=/nixpkgs/branches/stdenv-updates/; revision=14978
 2009-04-09 15:24:33 +00:00
Pjotr Prins 17e2100b03 Updated PAML package to 4.2a 
svn path=/nixpkgs/trunk/; revision=14262
 2009-02-26 15:22:13 +00:00
Pjotr Prins 7ba68d934f Added note on package status for 64 bits 
svn path=/nixpkgs/trunk/; revision=14090
 2009-02-17 08:23:21 +00:00
Pjotr Prins 387a7a85d6 Updated NCBI tools to latest version 
svn path=/nixpkgs/trunk/; revision=14087
 2009-02-16 16:38:55 +00:00
Lluís Batlle i Rossell 264a6c709a Adding alliance 5.0 
svn path=/nixpkgs/trunk/; revision=14008
 2009-02-08 16:28:31 +00:00
Marc Weber 7cd7c4cffb maxima version bump to 5.17.0 
svn path=/nixpkgs/trunk/; revision=13703
 2009-01-04 20:18:10 +00:00
Pjotr Prins 3ce5cba9c7 Added pkgMaintainer info to these 'biology' section packages. 
svn path=/nixpkgs/trunk/; revision=12987
 2008-10-07 15:12:06 +00:00
Pjotr Prins b3aa5d6bfc Added meta.pkgMaintainer to biology packages - a claim to fame, or 
you know who to blame!

svn path=/nixpkgs/trunk/; revision=12986
 2008-10-07 15:12:01 +00:00
Pjotr Prins 4ab58fc7f3 Squashed commit of the following: 
commit 74c0e9192e17d9dfce50f811fdb7e82a2785134e
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:33:39 2008 +0200

    Merge

commit ad91fb07a47226ed9e99f2dcb55b69ea0e70aa84
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:23:20 2008 +0200

    openmotif: added some comments on license and download

commit 68a552975f5c7e0964c7c9625e08de0864757255
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:10:49 2008 +0200

    Match parameters so arb starts compiling against openmotif

commit 16c52fb4071193f89acf6f7f53cfeff322285555
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:04:06 2008 +0200

    Added openmotif package

commit 75c4bba418f16859e99e97f48785e27ad87e99f5
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 15:20:55 2008 +0200

    Adding openmotif

commit 83a847d194b007e2ef856f2a5ad7c49939b6cf8c
Merge: 52918f1... 5ba4f06...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 14:15:05 2008 +0200

    Merge branch 'syncsvn'

    Conflicts:
    	pkgs/top-level/all-packages.nix

commit 52918f1f3af55429cc80c99d695e4a8d8b7869b0
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 18:31:06 2008 +0200

    arb: Removed xfig as dependency (will add later)
    arb: Don't recurse chmod settings of shared dir

commit c283733782dcbf0dcd88710e83f3eededf8f0866
Merge: e434cdf... a51773a...
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 17:09:42 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit a51773a3d4295d7ce16e6a7e983ded814180e30a
Merge: 290ae0b... 241012c...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 16:54:14 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit e434cdf9b9acefab4f54e18204ff16af179c442d
Merge: ef57566... 241012c...
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 16:12:27 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit 241012cae194d0f770be2224b5bb18b66e3ae0f0
Author: Pj <wrk@bio03.(none)>
Date:   Mon Oct 6 16:11:11 2008 +0200

    Added older version of lesstif for arb

commit 290ae0b802285a8dda41b3c5730e53239d73b47c
Merge: dfdf7fe... 53b6ceb...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 15:20:17 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit dfdf7fe8ac9599ec372bdb83630a236f227ad7d5
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 15:15:04 2008 +0200

    Fixed missing parameters for arb - and added kernelHeaders_2.6.18

commit ef57566834eb786cdcb57a799b7d1cb284eee389
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 15:06:26 2008 +0200

    Changed arb permissions and priority

svn path=/nixpkgs/trunk/; revision=12985
 2008-10-07 14:35:11 +00:00
Pjotr Prins bd0b84b3c7 Changed arb permissions and priority 
svn path=/nixpkgs/trunk/; revision=12969
 2008-10-06 13:17:56 +00:00
Pjotr Prins 6d70506401 Small fixes to ARB 
Included older kernel headers

svn path=/nixpkgs/trunk/; revision=12961
 2008-10-05 10:56:47 +00:00
Pjotr Prins c38a72a573 Added more dependencies for ARB 
svn path=/nixpkgs/trunk/; revision=12959
 2008-10-05 10:56:44 +00:00
Pjotr Prins fcb2efbc92 Added shared dir and updated reference to ARB 
svn path=/nixpkgs/trunk/; revision=12958
 2008-10-05 10:56:23 +00:00
Pjotr Prins 29d6189e8b The arb package (biology) 
svn path=/nixpkgs/trunk/; revision=12956
 2008-10-05 09:03:58 +00:00
Pjotr Prins 034f28e268 Biology package 
svn path=/nixpkgs/trunk/; revision=12953
 2008-10-05 09:00:19 +00:00
Pjotr Prins df1e47822b Lower priority of this package because of zlib.so conflict 
svn path=/nixpkgs/trunk/; revision=12945
 2008-10-05 08:42:40 +00:00
Pjotr Prins c09e1e540c Introduced pal2nal package 
svn path=/nixpkgs/trunk/; revision=12896
 2008-09-19 13:39:17 +00:00
Pjotr Prins 301f2e3094 Bumped PAML version 
svn path=/nixpkgs/trunk/; revision=12895
 2008-09-19 13:36:35 +00:00
Nicolas Pierron 6c4a6e83b4 Move maxima close to scilab. (applications/science/math) 
Requested by Michael Raskin.

svn path=/nixpkgs/trunk/; revision=12812
 2008-09-05 17:21:45 +00:00
Nicolas Pierron 517a120ff8 Add scilab-4.1.2 
svn path=/nixpkgs/trunk/; revision=12810
 2008-09-05 17:12:04 +00:00
Marc Weber 2d354aa6f1 added ngspice 
svn path=/nixpkgs/trunk/; revision=12686
 2008-08-21 20:43:53 +00:00
Pjotr Prins 2a845ebb7a Removing clustalw2 package - may come back later 
svn path=/nixpkgs/trunk/; revision=12400
 2008-07-23 08:37:00 +00:00
Pjotr Prins 0014ffcbae Updated emboss package to 6.0.1 
svn path=/nixpkgs/trunk/; revision=12399
 2008-07-23 08:22:23 +00:00
Michael Raskin 5ba53d93b5 Added DrGeo 
svn path=/nixpkgs/trunk/; revision=12204
 2008-06-27 19:15:01 +00:00
Pjotr Prins 0e751ebadc Long description 
svn path=/nixpkgs/trunk/; revision=12005
 2008-06-07 06:41:18 +00:00
Pjotr Prins 289da88ccc Moved NCBI-tools to applications 
svn path=/nixpkgs/trunk/; revision=12004
 2008-06-07 06:34:02 +00:00
Pjotr Prins f9e018c80d biology/paml added 
svn path=/nixpkgs/trunk/; revision=11997
 2008-06-06 08:23:49 +00:00
Pjotr Prins 62c9176206 Added emboss 
svn path=/nixpkgs/trunk/; revision=11993
 2008-06-05 17:14:33 +00:00
Pjotr Prins 5866a8b101 tabs2spaces of .nix file 
svn path=/nixpkgs/trunk/; revision=11992
 2008-06-05 16:58:41 +00:00
Pjotr Prins 13463a6f01 MrBayes - a biology package for phylogeny 
svn path=/nixpkgs/trunk/; revision=11986
 2008-06-05 13:35:45 +00:00
Andres Löh 12ca68d114 Added a preliminary expression for Coq (no IDE support yet). 
svn path=/nixpkgs/trunk/; revision=11983
 2008-06-04 15:10:05 +00:00
Pjotr Prins 849e3eb21c biology/clustalw2 package 
svn path=/nixpkgs/trunk/; revision=11631
 2008-04-15 09:32:12 +00:00